Neuroimaging Made Easy

The main aim of this series is to facilitate and automate processing and analysis of brain data. In addition, it could be helpful explaining non clear stages and steps of brain data processing of some software. Please feel free to offer suggestions. الهدف من هذه المدونة هو تعريف المستخدمين العرب ببعض التقنيات والبرامج والتصاميم وتبادل المهارات مع الأخوة العاملين والباحثين في المجال وقد دفعني لذلك ندرة وجود مواقع أو مدونات عربية تهتم بمجال تصوير أجزاء الدماغ ودراسة وظائفها

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  • Easy Neuroimaging
  • Conference Proceedings
  • Journal Articles
  • تقنيات تصوير الجهاز العصبي

Sunday 27 November 2011

mri_convert_multidata

This script helps automate mri_convert command in freesurfer for large set of data 
For download
Multi_mri_convert

http://www.freesurfer.net/fswiki/Easyfreesurfer


Please leave your feedback if you like this tool or a suggestion if you think it needs to be improved!



Related links
Easyfreesurfer
Using applescript to convert freesurfer stats2table (asegstats2table & aparcstats2table)
Using bash script to convert freesurfer stats2table (asegstats2table & aparcstats2table)
Posted by Jamaan Alghamdi at 20:39
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Labels: analyze, Applescript, bash, dicm to mgz, DICOM, freesurfer, img, img to mgz, mgz, mri, mri_convert, multi data set, NIfTI, nii, nii to mgz, nii.gz, nii.gz to mgz, tcsh, Terminal

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  • ►  2012 (3)
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  • ▼  2011 (16)
    • ►  December (3)
    • ▼  November (6)
      • Run multiple BrainVoyager instances on Mac OSX
      • Synchronizing E-prime with an MRI scanner
      • mri_convert_multidata
      • Easyfreesurfer
      • Brainvoyager QX tips and tricks 2; Create a 3d sha...
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    • ►  March (7)

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Important programs to process MRI, fMRI, EEG and MEG data

  • AFNI (Free)
  • BESA ($)
  • BrainVISA / Anatomist (Free)
  • Brainvoyager ($)
  • Caret (Free)
  • Freesurfer (Free)
  • FSL (Free)
  • MedINRIA (Free)
  • MRIcro & MRIcron (Free)
  • SPM (Free)

Useful books

  • fMRI Techniques and Protocols
  • Handbook of Functional MRI Data Analysis
  • Matlab for Neuroscientists: An Introduction to Scientific Computing in Matlab
  • MEG: An Introduction to Methods
  • MRI from Picture to Proton
  • Music, Language, and the Brain
  • Statistical Parametric Mapping: The Analysis of Functional Brain Images

Contacts

Department of Physics
Faculty of Sciences
King Abdulaziz University
P.O. Box 80203
Jeddah 21589
Saudi Arabia
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