Sunday 27 November 2011


Easyfreesurfer is a simple script which was written to simplify and automate most freesurfer processes. It controls some commands such as; recon-all and mri_convert without writing any command in terminal, as user will only need to use mouse to select options and click buttons. This applescript works with both shell types bash and tcsh but it is suitable for Mac OS X only.
For download click here

For using bash script, which works on both Linux and MAC, user needs to copy this script to data directory and execute it from there. 

Bash script works on bash shell only where "chmod +x" command used to make it executable as following;
chmod +x easyfreesurfer_bash.command 
chmod +x

Please leave your feedback if you like this tool or a suggestion if you think it needs to be improved!

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